Hao Xu, Yun Han, Xiaofeng Chi, Jingya Yu, Mingze Xia, Shuang Han, Yu Niu, Faqi Zhang*, Shilong Chen*. Integration of De Novo Chromosome-Level Genome and Population Resequencing of Peganum (Nitrariaceae): A Case Study of Speciation and Evolutionary Trajectories in Arid Central Asia. Molecular Ecology Resources, 25: e14078, 2025.
Jingya Yu, Yun Han, Mingze Xia, Hao Xu, Shuang Han, Xiaoping Li, Yu Niu, Shilong Chen, Faqi Zhang*. Multiple molecular data provide new insights into phylogeny and historical biogeography of East Asian Artemisia L. (Asteraceae), Botanical Journal of the Linnean Society, boaf016, 2025
Xiaoping Li, Yun Han, Lei Miao, Hao Xu, Jingya Yu, Shuang Han, Faqi Zhang*. Investigating the formation and evolution of plant diversity patterns in the Qiangtang Plateau based on phylofloristics approach. Global Ecology and Conservation, 58: e03479, 2025.
Mingze Xia, Xiaofeng Chi, Jingya Yu, Yun Han, Shuang Han, Shilong Chen, Yan Li*, Faqi Zhang*. Genetic structure and conservation implications of Lancea tibetica (Mazaceae), a traditional Tibetan medicinal plant endemic to the Qinghai- Tibet Plateau. BMC Plant Biology 25: 222, 2025.
Xiaoping Li, Hao Xu, Jingya Yu, Yun Han, Shuang Han, Yu Niu, Faqi Zhang*. Comparative and phylogenetic analysis of Potentilla and Dasiphora (Rosaceae) based on plastid genome. BMC Plant Biol 25: 176, 2025.
Qiang Li, Jingya Yu, Xu-jie Ding, Mingze Xia, Shuang Han, Shilong Chen, Faqi Zhang*. Population genetics and ecological niche modelling shed light on species boundaries and evolutionary history of Aconitum pendulum and A. flavum. Flora 314: 152507, 2024.
Hao Xu, Yuqin Guo, Mingze Xia, Jingya Yu, Xiaofeng Chi, Yun Han, Xiaoping Li, Faqi Zhang*. An updated phylogeny and adaptive evolution within Amaranthaceae s.l. inferred from multiple phylogenomic datasets. Ecology and Evolution, 14, e70013, 2024.
Jingya Yu, Yun Han, Hao Xu, Shuang Han, Xiaoping Li, Yu Niu, Shilong Chen, Faqi Zhang*. Structural divergence and phylogenetic relationships of Ajania (Asteraceae) from plastomes and ETS. BMC Genomics 24: 602, 2023.
Xia Mingze, Li Yan, Zhang Faqi*, Yu Jingya, Gulzar Khan, Chi Xiaofeng, Xu Hao, Chen Shilong*. Reassessment of the Phylogeny and Systematics of Chinese Parnassia (Celastraceae): A Thorough Investigation Using Whole Plastomes and Nuclear Ribosomal DNA, Frontiers in Plant Science 13: 855944, 2022.
Jingya Yu, Mingze Xia, Yongcui Wang, Xiaofeng Chi, Hao Xu, Shilong Chen*, Faqi Zhang*. Short and long reads chloroplast genome assemblies and phylogenomics of Artemisia tangutica (Asteraceae). Biologia,77: 915–930, 2022.
Qiang Li, Mingze Xia, Jingya Yu, Shilong Chen, Faqi Zhang*. Plastid genome insight to taxonomic problem for Acomituimm pendulum and A. flavum (Ranunculaceae), Biologia, 77: 953–966, 2022.
Yu Zhang, Jingya Yu, Mingze Xia, Xiaofeng Chi, Gulzar Khan, Shilong Chen, Faqi Zhang*. Plastome sequencing reveals phylogenetic relationships among Comastoma and related taxa (Gentianaceae) from the Qinghai-Tibetan Plateau. Ecology and Evolution, 11: 16034-16046, 2021.
Mingze Xia, Zunzhe Tian, Faqi Zhang*, Gulzar Khan, Qingbo Gao, Rui Xing, Yu Zhang, Jingya Yu, Shilong Chen*. Deep intraspecific divergence in Lancea tibetica (Mazaceae) distributed over the Qinghai-Tibetan Plateau. Frontiers in Genetics 9:492, 2018.
Gulzar Khan, Faqi Zhang*, Qingbo Gao, Pengcheng Fu, Yu Zhang, Shilong Chen*, Spiroides shrubs on Qinghai-Tibetan Plateau: Multilocus phylogeography and palaeodistributional reconstruction of Spiraea alpina and S. Mongolica (Rosaceae), Molecular Phylogenetics and Evolution, 123:137-148, 2018.
Svetlana Zhigzhitzhapova, Tuyana Randalova, Larisa Radnaeva, Elena Dylenova, Shilong Chen, Faqi Zhang*. Chemical Composition of Essentials Oils of Artemisia frigida Willd. (Asteraceae) Grown in the North and Central Asia. Journal of Essential Oil Bearing Plants, 20 (4): 915-926, 2017.
Zunzhe Tian, Faqi Zhang *, Hairui Liu, Qingbo Gao, Shilong Chen*. Development of SSR markers for a tibetan medicinal plant, Lancea tibetica (Phrymaceae), baSeD on RaD Sequencing. Applications in Plant Sciences, 4(11): 1600076, 2016.
Svetlana Zhigzhitzhapova, Larisa Radnaeva, Qingbo Gao, Shilong Chen, Zhang Faqi*. Chemical composition of volatile organic compounds of Artemisia vulgaris L. (Asteraceae) from the Qinghai–Tibet Plateau. Industrial Crops and Products, 83: 462–469, 2016.
Gulzar Khan*, Faqi Zhang*, Qingbo Gao, Pengcheng Fu, Rui Xing, Jiuli Wang, Hairui Liu, Shilong Chen*. Phylogenetic analyses of Spiraea (Rosaceae) distributed in the Qinghai-Tibetan Plateau and adjacent regions: insights from molecular data. Plant Systematics and Evolution, 302:11–21, 2016.
Faqi Zhang, Yinhu Li, Qingbo Gao, Shuyun Lei, Shilong Chen *. Development and characterization of polymorphic microsatellite loci for Saxifraga egregia (Saxifragaceae). Applications in Plant Sciences, 3(8): 1500037, 2015.
Svetlana Zhigzhitzhapova, TE Randalova, Radnaeva Larisa, OA Anenkhonov, Shilong Chen, Faqi Zhang*. Comparative studies on composition of essential oil in three wormwoods (Artemisia L.) from Buryatia and Mongolia. Journal of Essential Oil Bearing Plants, 18(3): 637-641, 2015.
Svetlana Zhigzhitzhapova, Larisa Radnaeva, Shilong Chen, Pengcheng Fu, Faqi Zhang*, Chemical composition of the essential oil of Artemisia hedinii Ostenf. et Pauls. from the Qinghai-Tibetan Plateau. Industrial Crops and Products 62: 293–298, 2014.
Faqi Zhang, Qingbo Gao,Gulzar Khan, Keming Luo, Shilong Chen *, Comparative transcriptome analysis of aboveground and underground tissues of Rhodiola algida, an important ethno-medicinal herb endemic to the Qinghai-Tibetan Plateau. Gene 553: 90-97, 2014.
Faqi Zhang, Qingbo Gao, Dejun Zhang, Yizhong Duan, Yinhu Li, Pengcheng Fu, Rui Xing, Gulzar Khan, Shilong Chen *, Phylogeography of Spiraea alpina (Rosaceae) on the Qinghai-Tibetan plateau inferred from the chloroplast DNA.Journal of Systematics and Evolution, 50(4): 276-283, 2012.